STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_0229Peptidase, family M23. (325 aa)    
Predicted Functional Partners:
GFO_0228
MerR family transcriptional regulator protein.
  
    0.784
GFO_0225
Membrane protein containing DUF477.
       0.774
GFO_0227
LemA family protein.
       0.774
GFO_0226
Protein containing DUF477.
       0.773
GFO_3273
Protein containing DUF583.
 
   
 0.685
GFO_2507
Conserved hypothetical protein, secreted.
  
   
 0.651
mrcA-2
Bifunctional transglycosylase/transpeptidase penicillin-binding protein.
  
   
 0.582
GFO_3257
Secreted peptidase, family M23.
 
   
 0.573
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
  
    0.567
GFO_0231
Conserved hypothetical protein.
  
    0.452
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.