STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_0236Conserved hypothetical protein. (56 aa)    
Predicted Functional Partners:
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
       0.777
GFO_0234
Conserved hypothetical protein, secreted.
       0.722
hutH
Histidine ammonia-lyase-1.
  
  
 0.652
hutH-2
Histidine ammonia-lyase-2.
  
  
 0.652
GFO_0308
WD40-like repeat containing amidohydrolase family protein.
  
  
 0.594
GFO_0237
Conserved hypothetical protein.
       0.592
GFO_0275
Amidohydrolase family protein.
  
  
 0.561
hutI
Imidazolonepropionase; Belongs to the metallo-dependent hydrolases superfamily. HutI family.
  
  
 0.561
GFO_0782
Metal-dependent hydrolase superfamily protein.
  
  
 0.561
GFO_0783
Metal-dependent hydrolase superfamily protein.
  
  
 0.561
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.