STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_0368Glycoside hydrolase, family 2; Belongs to the glycosyl hydrolase 2 family. (857 aa)    
Predicted Functional Partners:
GFO_0370
Secreted lipase/esterase.
 
   0.858
GFO_0369
Secreted protein containing PHP domain-likely a phosphoesterase.
       0.773
GFO_0359
Sulfatase.
 
 
 0.604
GFO_0371
Protein containing GatB/Yqey domain.
       0.559
galK
Galactokinase; Belongs to the GHMP kinase family. GalK subfamily.
 
  
 0.522
GFO_1698
Sulfatase.
 
 
 0.517
GFO_2663
Secreted protein.
  
     0.487
GFO_0394
Protein containing immunoglobulin-like domain.
  
     0.464
GFO_0393
Secreted hyalin domain protein-likely involved in carbohydrate binding or cell-adhesion.
  
     0.453
fucA
alpha-L-fucosidase.
   
 0.441
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.