STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_0374Secreted protein containing hyalin domain. (1676 aa)    
Predicted Functional Partners:
GFO_2907
Conserved hypothetical protein, secreted.
  
     0.542
GFO_3184
TonB-dependent outer membrane receptor.
  
 
   0.460
GFO_0375
Hypothetical protein.
       0.445
GFO_1343
Conserved hypothetical protein.
  
    0.431
GFO_1883
Conserved hypothetical protein, secreted.
 
      0.428
GFO_1148
Secreted alginate lyase-like protein.
  
   0.415
GFO_1241
Conserved hypothetical protein.
  
    0.411
GFO_2939
Conserved hypothetical protein, secreted.
  
    0.411
GFO_2223
Subtilisin-like serine protease.
  
   0.408
GFO_1145
Secreted alginate lyase-like protein.
  
   0.406
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.