STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_0378BLUF-domain protein. (133 aa)    
Predicted Functional Partners:
GFO_1960
Two-component system sensor histidine kinase/methyl-esterase/transferase hybrid.
 
 
 0.817
GFO_1684
Two-component system sensor histidine kinase/methyl-esterase/transferase hybrid.
 
 
 0.764
cbbE
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
       0.624
GFO_0376
FAD-dependent pyridine nucleotide-disulfde oxidoreductase.
       0.614
GFO_0848
Two-component system sensor histidine kinase/response regulator hybrid.
  
 
 0.580
rpoD
RNA polymerase sigma-70 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
   
 
 0.575
GFO_1980
Protein containing PAS domain.
  
 
 0.519
GFO_1419
Two-component system sensor histidine kinase.
 
 
 0.494
GFO_2705
Two-component system sensor histidine kinase/response regulator hybrid.
 
  
 0.494
crtZ
Gamma-carotene hydroxylase.
   
  
 0.468
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.