STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_0474ABC-type transporter ATP-binding protein. (216 aa)    
Predicted Functional Partners:
GFO_1083
ABC-type transporter permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
 
 0.937
GFO_0479
ABC-type transporter periplasmic binding protein.
  
 
 0.858
GFO_1084
ABC-type transporter periplasmic binding protein.
  
 
 0.817
GFO_0475
Membrane protein.
       0.773
GFO_1949
ABC-type transporter ATP-binding protein.
  
   0.722
lolD
Lipoprotein releasing system ATP-binding protein LolD; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
  
   0.693
GFO_0716
ABC-type transporter ATP-binding protein.
  
   0.537
GFO_0476
Membrane protein.
       0.534
GFO_0196
ABC-type transporter ATP-binding protein.
  
   0.511
GFO_0709
ABC-type transporter ATP-binding protein.
  
   0.476
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.