STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_0510Two-component system response regulator containing sigma-54 interaction domain. (388 aa)    
Predicted Functional Partners:
GFO_1684
Two-component system sensor histidine kinase/methyl-esterase/transferase hybrid.
  
 
 0.837
GFO_1960
Two-component system sensor histidine kinase/methyl-esterase/transferase hybrid.
  
 
 0.819
rpoN
RNA polymerase sigma-54 factor.
 
  
 0.800
GFO_0506
ABC-type transporter ATP-binding protein.
       0.782
GFO_0507
ABC-type transporter permease protein.
       0.782
mscS-3
Small-conductance mechanosensitive ion channel protein.
       0.781
GFO_0509
Conserved hypothetical protein, secreted.
       0.780
GFO_3216
Two-component system sensor histidine kinase.
 
 0.713
GFO_0729
Two-component system sensor histidine kinase.
 
 0.688
GFO_0335
Secreted protein.
  
  
 0.572
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.