STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_0546ABC-type transporter ATP-binding protein. (428 aa)    
Predicted Functional Partners:
GFO_0542
O-antigen export system permease protein.
 
 0.999
GFO_0547
FkbM family methyltransferase.
 
     0.829
GFO_0548
Protein containing nucleotide-diphospho-sugar transferase domain.
  
  
 0.824
GFO_0539
Polysaccharide export outer membrane protein.
 
  
 0.791
GFO_0550
SpsC-like DegT/DnrJ/EryC1/StrS family aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.736
GFO_0549
Conserved hypothetical protein.
       0.712
GFO_0551
Formyltransferase family protein.
       0.712
GFO_0552
RfbU-like lipopolysaccharide O-antigen biosynthesis glycosyl transferase.
 
 
 0.689
GFO_1984
Polysaccharide export protein.
  
  
 0.668
gmd
GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
 
  
 0.666
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.