Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GFO_0132 | GFO_0628 | GFO_0132 | GFO_0628 | Conserved hypothetical protein; Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC). | uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase. | 0.540 |
GFO_0628 | GFO_0132 | GFO_0628 | GFO_0132 | uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase. | Conserved hypothetical protein; Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC). | 0.540 |
GFO_0628 | GFO_0629 | GFO_0628 | GFO_0629 | uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase. | Low molecular weight phosphotyrosine protein phosphatase. | 0.892 |
GFO_0628 | GFO_0631 | GFO_0628 | GFO_0631 | uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase. | Thioesterase superfamily protein-possibly 4-hydroxybenzoyl-CoA thioesterase. | 0.545 |
GFO_0628 | GFO_1796 | GFO_0628 | GFO_1796 | uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase. | Protein containing DUF149; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | 0.425 |
GFO_0628 | dnaA | GFO_0628 | GFO_0630 | uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase. | Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | 0.939 |
GFO_0629 | GFO_0628 | GFO_0629 | GFO_0628 | Low molecular weight phosphotyrosine protein phosphatase. | uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase. | 0.892 |
GFO_0629 | GFO_0631 | GFO_0629 | GFO_0631 | Low molecular weight phosphotyrosine protein phosphatase. | Thioesterase superfamily protein-possibly 4-hydroxybenzoyl-CoA thioesterase. | 0.549 |
GFO_0629 | dnaA | GFO_0629 | GFO_0630 | Low molecular weight phosphotyrosine protein phosphatase. | Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | 0.910 |
GFO_0631 | GFO_0628 | GFO_0631 | GFO_0628 | Thioesterase superfamily protein-possibly 4-hydroxybenzoyl-CoA thioesterase. | uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase. | 0.545 |
GFO_0631 | GFO_0629 | GFO_0631 | GFO_0629 | Thioesterase superfamily protein-possibly 4-hydroxybenzoyl-CoA thioesterase. | Low molecular weight phosphotyrosine protein phosphatase. | 0.549 |
GFO_0631 | dnaA | GFO_0631 | GFO_0630 | Thioesterase superfamily protein-possibly 4-hydroxybenzoyl-CoA thioesterase. | Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | 0.602 |
GFO_1796 | GFO_0628 | GFO_1796 | GFO_0628 | Protein containing DUF149; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase. | 0.425 |
dnaA | GFO_0628 | GFO_0630 | GFO_0628 | Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase. | 0.939 |
dnaA | GFO_0629 | GFO_0630 | GFO_0629 | Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | Low molecular weight phosphotyrosine protein phosphatase. | 0.910 |
dnaA | GFO_0631 | GFO_0630 | GFO_0631 | Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | Thioesterase superfamily protein-possibly 4-hydroxybenzoyl-CoA thioesterase. | 0.602 |