STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_0634Haloacid dehalogenase-like hydrolase-possibly phosphatase. (202 aa)    
Predicted Functional Partners:
mro-2
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
  
 
  0.913
ppgK
Polyphosphate glucokinase.
   
 
  0.905
mro
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
   
 
  0.902
ribD
Bifunctional riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
     
 0.864
GFO_0633
Membrane protein containing DUF6.
 
     0.833
GFO_0632
Conserved hypothetical protein, UPF0029.
       0.800
GFO_0636
GNAT family acetyltransferase.
 
     0.655
hemK
Modification methylase HemK; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.
  
    0.561
GFO_1964
Secreted glycyl aminopeptidase, family M61.
  
     0.555
GFO_0613
Membrane protein.
  
     0.521
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.