STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_0688TonB-dependent outer membrane receptor. (1018 aa)    
Predicted Functional Partners:
GFO_0689
SusD/RagB family protein.
 
   0.954
GFO_1712
SusD/RagB family protein.
 
 
   0.821
abnA
Arabinan endo-1,5-alpha-L-arabinosidase; Belongs to the glycosyl hydrolase 43 family.
 
     0.819
GFO_0362
SusD/RagB family protein containing tetratricopeptide repeat.
 
   0.692
GFO_1732
SusD/RagB family protein containing tetratricopeptide repeats.
 
 
   0.671
GFO_0692
Conserved hypothetical protein, membrane or secreted.
 
     0.664
abnA-2
Arabinan endo-1,5-alpha-L-arabinosidase.
 
     0.655
GFO_0693
Glycosyl hydrolase, family 43-possibly xylosidase/arabinosidase; Belongs to the glycosyl hydrolase 43 family.
 
     0.627
GFO_0034
SusD/RagB family protein.
 
     0.614
GFO_2139
SusD/RagB family protein.
 
     0.576
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.