STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arfAalpha-L-arabinofuranosidase. (516 aa)    
Predicted Functional Partners:
GFO_0692
Conserved hypothetical protein, membrane or secreted.
 
  
 0.949
abnA
Arabinan endo-1,5-alpha-L-arabinosidase; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.947
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
 
 0.946
abnA-2
Arabinan endo-1,5-alpha-L-arabinosidase.
 
  
 0.943
GFO_0693
Glycosyl hydrolase, family 43-possibly xylosidase/arabinosidase; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.937
GFO_0695
alpha-L-arabinofuranosidase; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.879
GFO_1874
Aldo/keto reductase family protein.
    
  0.803
araD
L-ribulose-5-phosphate 4-epimerase.
 
  
 0.682
GFO_0689
SusD/RagB family protein.
 
     0.627
ribD
Bifunctional riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
   
    0.593
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.