Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GFO_0236 | hutH | GFO_0236 | GFO_1500 | Conserved hypothetical protein. | Histidine ammonia-lyase-1. | 0.652 |
GFO_0236 | hutH-2 | GFO_0236 | GFO_1668 | Conserved hypothetical protein. | Histidine ammonia-lyase-2. | 0.652 |
GFO_0236 | hutI | GFO_0236 | GFO_0758 | Conserved hypothetical protein. | Imidazolonepropionase; Belongs to the metallo-dependent hydrolases superfamily. HutI family. | 0.561 |
GFO_0236 | hutU | GFO_0236 | GFO_0235 | Conserved hypothetical protein. | Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate. | 0.777 |
GFO_0759 | GFO_0760 | GFO_0759 | GFO_0760 | Conserved hypothetical protein. | Zinc-type alcohol dehydrogenase. | 0.773 |
GFO_0759 | hutG | GFO_0759 | GFO_0757 | Conserved hypothetical protein. | Formimidoylglutamase; Belongs to the arginase family. | 0.460 |
GFO_0759 | hutI | GFO_0759 | GFO_0758 | Conserved hypothetical protein. | Imidazolonepropionase; Belongs to the metallo-dependent hydrolases superfamily. HutI family. | 0.460 |
GFO_0760 | GFO_0759 | GFO_0760 | GFO_0759 | Zinc-type alcohol dehydrogenase. | Conserved hypothetical protein. | 0.773 |
GFO_0760 | hutG | GFO_0760 | GFO_0757 | Zinc-type alcohol dehydrogenase. | Formimidoylglutamase; Belongs to the arginase family. | 0.460 |
GFO_0760 | hutI | GFO_0760 | GFO_0758 | Zinc-type alcohol dehydrogenase. | Imidazolonepropionase; Belongs to the metallo-dependent hydrolases superfamily. HutI family. | 0.460 |
GFO_3016 | hutH | GFO_3016 | GFO_1500 | Conserved hypothetical protein; Belongs to the arginase family. | Histidine ammonia-lyase-1. | 0.402 |
GFO_3016 | hutH-2 | GFO_3016 | GFO_1668 | Conserved hypothetical protein; Belongs to the arginase family. | Histidine ammonia-lyase-2. | 0.402 |
GFO_3016 | hutI | GFO_3016 | GFO_0758 | Conserved hypothetical protein; Belongs to the arginase family. | Imidazolonepropionase; Belongs to the metallo-dependent hydrolases superfamily. HutI family. | 0.613 |
hutG | GFO_0759 | GFO_0757 | GFO_0759 | Formimidoylglutamase; Belongs to the arginase family. | Conserved hypothetical protein. | 0.460 |
hutG | GFO_0760 | GFO_0757 | GFO_0760 | Formimidoylglutamase; Belongs to the arginase family. | Zinc-type alcohol dehydrogenase. | 0.460 |
hutG | hutH | GFO_0757 | GFO_1500 | Formimidoylglutamase; Belongs to the arginase family. | Histidine ammonia-lyase-1. | 0.499 |
hutG | hutH-2 | GFO_0757 | GFO_1668 | Formimidoylglutamase; Belongs to the arginase family. | Histidine ammonia-lyase-2. | 0.412 |
hutG | hutI | GFO_0757 | GFO_0758 | Formimidoylglutamase; Belongs to the arginase family. | Imidazolonepropionase; Belongs to the metallo-dependent hydrolases superfamily. HutI family. | 0.993 |
hutG | hutU | GFO_0757 | GFO_0235 | Formimidoylglutamase; Belongs to the arginase family. | Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate. | 0.425 |
hutH | GFO_0236 | GFO_1500 | GFO_0236 | Histidine ammonia-lyase-1. | Conserved hypothetical protein. | 0.652 |
page 1 of 3