STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GFO_0804Conserved hypothetical protein, secreted. (196 aa)    
Predicted Functional Partners:
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate.
       0.819
parB
ParB-like chromosome partition protein; Belongs to the ParB family.
       0.819
parA
ParA-like ATPase.
       0.819
lepB
Signal peptidase I; Belongs to the peptidase S26 family.
 
     0.801
GFO_0801
Conserved hypothetical protein.
 
     0.796
GFO_0531
Conserved hypothetical protein.
  
     0.715
GFO_1640
Conserved hypothetical protein.
  
    0.714
GFO_3592
Conserved hypothetical protein, membrane or secreted.
  
    0.702
GFO_0794
Protein containing tetratricopeptide repeats.
  
     0.699
GFO_2980
Conserved hypothetical protein, secreted.
  
     0.674
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.