STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_0808Short-chain dehydrogenase/reductase family protein-possibly 2,4-dienoyl-CoA reductase. (292 aa)    
Predicted Functional Partners:
GFO_2721
O-methyltransferase protein.
 
  
 
 0.806
mutB
methylmalonyl-CoA mutase large subunit.
  
  
 0.604
mutA
methylmalonyl-CoA mutase small subunit.
     
 0.555
GFO_0359
Sulfatase.
   
 
 0.544
GFO_1698
Sulfatase.
   
 
 0.544
GFO_0966
Short-chain dehydrogenase/reductase family protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
   0.543
fabD
Malonyl CoA-acyl carrier protein transacylase.
 
 
 0.523
GFO_3092
Membrane protein.
  
     0.504
pqqL
Zinc protease PqqL; Belongs to the peptidase M16 family.
   
   0.497
udk
Uridine kinase.
  
   0.477
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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