STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_0830Conserved hypothetical protein, secreted. (670 aa)    
Predicted Functional Partners:
GFO_2449
Phage portal protein.
  
     0.716
GFO_1371
Type I restriction-modification system methyltransferase subunit.
  
    0.679
GFO_1369
Conserved hypothetical protein.
  
     0.633
GFO_2426
Phage tail tape measure protein.
  
     0.617
GFO_0582
Conserved hypothetical protein, membrane.
  
     0.588
GFO_2214
Conserved hypothetical protein.
  
     0.552
GFO_0575
Glycosyl transferase, group 1.
  
    0.536
GFO_1972
Membrane protein containing DUF6.
  
     0.499
GFO_1249
Membrane protein.
  
     0.466
GFO_0577
Glycosyl transferase, family 2.
  
     0.457
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.