STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oxyRRedox-sensitive transcriptional activator; Belongs to the LysR transcriptional regulatory family. (320 aa)    
Predicted Functional Partners:
gltB
Glutamate synthase (NADPH) large subunit.
  
  
 0.683
GFO_0006
Sugar-binding sensor histidine kinase/response regulator hybrid.
   
  
 0.524
GFO_2047
Dps family ferritin-like DNA-binding protein; Belongs to the Dps family.
 
   
 0.494
GFO_0998
Conserved hypothetical protein, secreted.
       0.441
GFO_0036
Two-component system sensor histidine kinase/response regulator hybrid.
  
  
 0.432
GFO_3222
Protein containing AraC type HTH domain.
  
  
 0.424
GFO_3205
Iron dependent repressor.
  
 
 0.421
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.