STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_1003Conserved hypothetical protein, membrane. (288 aa)    
Predicted Functional Partners:
GFO_1002
Secreted protein.
 
    0.953
GFO_1001
Conserved hypothetical protein, membrane.
 
     0.951
GFO_1004
Membrane protein containing DUF95.
 
     0.949
GFO_0999
Membrane protein containing DUF58.
 
     0.936
GFO_1005
RDD family membrane protein.
 
     0.901
moxR
MoxR-like AAA family ATPase.
  
    0.787
GFO_1071
Conserved hypothetical protein, secreted.
  
    0.654
GFO_1538
Conserved hypothetical protein, secreted.
  
     0.539
GFO_0828
Conserved hypothetical protein, secreted.
  
     0.530
GFO_0998
Conserved hypothetical protein, secreted.
       0.528
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.