STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_1024GFO/IDH/MocA family oxidoreductase. (378 aa)    
Predicted Functional Partners:
GFO_1023
Apurinic/apyrimidinic endonuclease.
 
  
 0.972
GFO_1026
Conserved hypothetical protein, secreted.
 
  
 0.916
GFO_1022
Conserved hypothetical protein, secreted.
 
    0.882
GFO_1025
Nucleoside:proton symporter.
 
     0.863
GFO_1027
Glucoside 3-dehydrogenase.
 
  
 0.855
GFO_1028
Conserved hypothetical protein.
 
    0.738
GFO_1021
OsmC-like protein.
  
   0.559
lysS
lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.542
GFO_1146
Protein containing xylose isomerase-like TIM barrel domain.
  
  
 0.525
rfbB
dTDP-D-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.510
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.