STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_1062Membrane protein. (176 aa)    
Predicted Functional Partners:
arnC
Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase.
       0.782
GFO_2161
Conserved hypothetical protein, membrane.
  
     0.653
GFO_1060
Phosphoglucomutase/phosphomannomutase.
       0.638
msbA
Lipid A export ATP-binding/permease protein.
       0.617
GFO_1093
Hypothetical protein.
  
     0.602
GFO_3259
Secreted protein containing tetratricopeptide repeats.
  
     0.580
GFO_3280
Membrane protein.
  
     0.564
rpmE2
50S ribosomal protein L31 type B; Belongs to the bacterial ribosomal protein bL31 family.
       0.544
GFO_0461
Two-component system response regulator.
  
     0.535
GFO_0187
Conserved hypothetical protein.
  
     0.475
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.