STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_1146Protein containing xylose isomerase-like TIM barrel domain. (321 aa)    
Predicted Functional Partners:
GFO_1145
Secreted alginate lyase-like protein.
 
    0.710
GFO_2025
Oxidoreductase.
 
  
 0.653
GFO_1148
Secreted alginate lyase-like protein.
 
    0.638
GFO_1147
Secreted alginate lyase-like protein.
 
    0.609
GFO_0667
GFO/IDH/MocA family oxidoreductase.
  
  
 0.525
GFO_1024
GFO/IDH/MocA family oxidoreductase.
  
  
 0.525
GFO_1545
Periplasmic oxidoreductase containing N-terminal domain of GFO/IDH/MocA family.
  
  
 0.525
GFO_1818
Protein containing oxidoreductase domain.
  
  
 0.525
GFO_2034
Oxidoreductase.
  
  
 0.525
gfo
Glucose--fructose oxidoreductase.
  
  
 0.525
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.