STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_1152Pectin degradation protein. (114 aa)    
Predicted Functional Partners:
GFO_1151
Protein containing chondroitin AC/alginate lyase domain.
 
     0.925
GFO_1150
Secreted protein containing chondroitin AC/alginate lyase domain.
 
     0.840
GFO_1159
Major facilitator superfamily permease-possibly hexuronate/hexarate transporter.
 
    0.735
GFO_1147
Secreted alginate lyase-like protein.
 
     0.709
GFO_1158
GntR family transcriptional regulator protein.
 
  
 0.705
kdgK
2-dehydro-3-deoxygluconokinase.
 
  
 0.576
GFO_1153
TonB-dependent outer membrane receptor.
 
     0.529
kdgK-2
2-dehydro-3-deoxygluconokinase.
 
  
 0.515
GFO_1156
Secreted alginate lyase-like protein.
 
     0.483
GFO_1154
SusD/RagB family protein.
 
     0.478
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.