STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_1201Fur family transcriptional regulator protein; Belongs to the Fur family. (142 aa)    
Predicted Functional Partners:
GFO_1200
Heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase.
 
   
 0.681
GFO_1198
Conserved hypothetical protein, membrane.
       0.623
GFO_1199
MgtC/SapB family transporter.
       0.623
lpd
Dihydrolipoamide dehydrogenase.
  
    0.548
GFO_1187
HlyD family secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
     0.523
GFO_1196
Membrane protein containing divergent AAA domain.
 
     0.520
GFO_1190
Conserved hypothetical protein.
 
     0.505
rpoA
DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.496
GFO_0024
Heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase.
 
   
 0.491
rpoD
RNA polymerase sigma-70 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
 
 0.484
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.