STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_1217ArnT-like undecaprenyl-phosphate alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase. (551 aa)    
Predicted Functional Partners:
kdtA
3-deoxy-D-manno-octulosonic-acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
 
  
  0.929
GFO_1218
Membrane protein containing the N-terminal domain of lipid-A-disaccharide synthase.
     0.922
lpxK
Tetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).
 
  
 0.922
GFO_1219
Glycosyl transferase, family 2.
  
 0.897
GFO_3621
Membrane protein containing the N-terminal domain of lipid-A-disaccharide synthase.
     0.878
GFO_1694
Membrane protein containing the N-terminal domain of lipid-A-disaccharide synthase.
     0.860
GFO_1739
Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase-like protein.
 
  
 0.762
arnC
Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase.
 
  
 0.572
GFO_1220
NAD-dependent epimerase/dehydratase family protein.
 
  
 0.552
GFO_1216
Secreted PAP2 superfamily protein.
  
    0.545
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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