STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_1231Phage integrase family protein; Belongs to the 'phage' integrase family. (337 aa)    
Predicted Functional Partners:
GFO_1230
Phage integrase family protein.
 
     0.947
GFO_1229
Phage integrase family protein; Belongs to the 'phage' integrase family.
 
    
0.841
GFO_1352
Phage integrase family protein.
 
     0.777
GFO_1232
Protein containing domain of DNA repair protein RadC.
       0.518
ftsK
DNA translocase.
 
   
 0.514
GFO_1233
Hypothetical protein.
       0.505
GFO_1228
RadC-like DNA repair protein.
       0.477
ssb
Single-stranded DNA-binding protein.
       0.434
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.