STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_1309Conserved hypothetical protein, secreted. (417 aa)    
Predicted Functional Partners:
GFO_1307
Protein containing DUF1111.
 
    0.948
GFO_1308
Membrane or secreted protein containing Rieske [2Fe-2S] domain.
 
     0.946
GFO_1838
OmpA/MotB family outer membrane protein.
  
 
 0.860
GFO_2865
OmpA/MotB family outer membrane protein.
  
 
 0.860
GFO_1380
PqqL-like family 16 peptidase.
  
     0.662
GFO_1312
Conserved hypothetical protein, membrane.
  
    0.559
GFO_0010
TonB-dependent outer membrane receptor.
  
 
 
 0.496
GFO_0308
WD40-like repeat containing amidohydrolase family protein.
   
 
 0.493
czcA-2
Heavy metal cation efflux protein CzcA; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
     0.493
GFO_0623
Periplasmic trypsin-like serine protease.
    
 
 0.469
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.