STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_1471Conserved hypothetical protein. (352 aa)    
Predicted Functional Partners:
GFO_0114
LuxE family acyl-protein synthetase.
 
 
 0.839
GFO_3422
Conserved hypothetical protein.
  
     0.732
hemD
uroporphyrinogen-III synthase.
  
     0.705
serA-2
D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
  
 
 0.699
serC
Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily.
  
  
 0.697
GFO_3289
Conserved hypothetical protein, auxin-inducible GH3 family.
 
 
 0.697
rpmF
50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
  
     0.688
GFO_0242
Conserved hypothetical protein, auxin-inducible GH3 family.
 
 
 0.680
GFO_2530
Conserved hypothetical protein.
  
     0.679
GFO_1635
Conserved hypothetical protein.
  
     0.671
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.