STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_1472Ferredoxin-like protein. (117 aa)    
Predicted Functional Partners:
mrpA
Na(+)/H(+) antiporter subunit A.
  
 
 0.999
GFO_1308
Membrane or secreted protein containing Rieske [2Fe-2S] domain.
  
 
 0.985
GFO_1930
Conserved hypothetical protein.
   
 0.918
GFO_2803
Conserved hypothetical protein.
   
 0.918
GFO_3389
Conserved hypothetical protein.
   
 0.918
GFO_3515
Conserved hypothetical protein.
   
 0.918
sdhB
Succinate dehydrogenase iron-sulfur protein.
   
 
 0.916
GFO_0246
Protein containing HPPK and dNK domain.
   
 0.911
dnk
Deoxyadenosine kinase.
   
 0.911
GFO_1606
Acyl-carrier protein.
   
 0.903
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.