STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_1484HTH_3 family transcriptional regulator protein. (140 aa)    
Predicted Functional Partners:
GFO_1483
Secreted protein.
 
     0.754
GFO_1881
Smr domain protein-possibly involved in DNA repair.
  
    0.640
GFO_1485
Peptidase, family M14.
 
     0.569
GFO_0649
Conserved hypothetical protein.
  
    0.492
GFO_0423
Conserved hypothetical protein, membrane.
  
     0.487
tonB-2
TonB protein.
  
     0.485
menC
O-succinylbenzoate synthase.
  
     0.482
GFO_3542
Conserved hypothetical protein, membrane.
  
    0.482
GFO_1111
Conserved hypothetical protein.
  
     0.475
GFO_3253
Conserved hypothetical protein.
  
     0.472
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.