STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_1546Conserved hypothetical protein. (150 aa)    
Predicted Functional Partners:
GFO_3430
Peptidoglycan-binding LysM domain containing protein.
   
  
 0.891
GFO_1545
Periplasmic oxidoreductase containing N-terminal domain of GFO/IDH/MocA family.
       0.773
GFO_1547
Ligand-gated ion channel family protein.
 
    0.699
GFO_1871
Secreted protein.
  
     0.561
fkpB
FKBP-type peptidyl-prolyl cis-trans isomerase.
       0.494
GFO_0236
Conserved hypothetical protein.
  
     0.445
GFO_3249
Hypothetical protein.
  
  
 0.431
GFO_3370
GNAT family acetyltransferase.
  
     0.430
GFO_1473
Conserved hypothetical protein, secreted.
  
     0.427
GFO_2735
Membrane or secreted protein.
  
     0.422
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.