STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_1658Membrane protein containing polysaccharide deacetylase domain. (256 aa)    
Predicted Functional Partners:
GFO_0844
Transmembrane family-2 glycosyl transferase-possibly involved in biofilm formation.
 
  
 0.932
GFO_0838
Transmembrane family-2 glycosyl transferase-possibly involved in biofilm formation.
 
  
 0.920
GFO_1657
LolA-like outer-membrane lipoprotein carrier protein.
 
    0.880
GFO_1666
Lipid A biosynthesis acyltransferase.
 
     0.862
GFO_1659
3-oxoacyl-[acyl-carrier-protein] synthase N-terminal domain-like protein.
 
     0.856
GFO_1662
Conserved hypothetical protein.
 
     0.856
GFO_1661
Acyl-carrier protein.
 
    0.853
hasA
Hyaluronan synthase.
 
  
 0.841
GFO_1665
FabZ-like protein.
 
     0.835
GFO_1663
3-oxoacyl-[acyl-carrier-protein] synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
     0.823
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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