STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_1709Zinc-type alcohol dehydrogenase. (335 aa)    
Predicted Functional Partners:
uxaA
Altronate hydrolase.
 
   
 0.852
fucA
alpha-L-fucosidase.
 
     0.835
kdgK-2
2-dehydro-3-deoxygluconokinase.
  
  
 0.798
GFO_1703
Short-chain dehydrogenase/reductase family protein.
 
  
 0.783
uxaB
Altronate oxidoreductase.
 
  
 0.766
GFO_1701
Protein containing DUF718.
 
    0.749
eda
KHG/KDPG aldolase.
     
 0.742
GFO_1704
Amidohydrolase family protein.
 
    0.730
fucP
L-fucose permease.
 
   
 0.591
sodA
Superoxide dismutase [Mn]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
   
  
 0.542
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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