STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_1751Conserved hypothetical protein. (277 aa)    
Predicted Functional Partners:
GFO_1750
Effector binding transcriptional activator protein.
       0.705
GFO_1752
CDF family cation efflux protein; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.
       0.618
GFO_0655
Conserved hypothetical protein, secreted.
  
     0.515
res
Helicase-like protein-possibly a type-III restriction enzyme.
 
     0.492
GFO_1749
Conserved hypothetical protein.
       0.482
GFO_3355
Hypothetical protein.
  
     0.461
GFO_0184
Membrane protein.
  
     0.458
GFO_3426
Conserved hypothetical protein.
  
     0.440
GFO_0077
Conserved hypothetical protein, membrane.
  
     0.435
truA-2
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
 
     0.433
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.