STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_1812UbiA family prenyltransferase. (304 aa)    
Predicted Functional Partners:
GFO_3065
Protein belonging to PcrB family; Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P).
 
   
 0.810
GFO_1810
Conserved hypothetical protein.
       0.784
kdsC
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase.
       0.784
maf
Septum formation protein Maf; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
       0.784
GFO_0537
Conserved hypothetical protein-possibly a methyltransferase.
  
   
 0.750
GFO_1815
Small-conductance mechanosensitive ion channel protein.
  
    0.727
GFO_0187
Conserved hypothetical protein.
  
     0.715
GFO_1814
Hypothetical protein.
       0.697
GFO_0073
Transmembrane family-2 glycosyl transferase-possibly involved in biofilm formation.
 
     0.682
GFO_2701
Transmembrane family-2 glycosyl transferase.
 
     0.631
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.