STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_1889Conserved hypothetical protein, secreted. (234 aa)    
Predicted Functional Partners:
GFO_1888
Hypothetical protein.
 
     0.948
fadA
3-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.903
GFO_1326
Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.903
atoB
acetoacetyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.903
trmA
tRNA (uracil-5-)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
       0.822
GFO_1782
Hypothetical protein.
  
     0.720
GFO_0407
Hypothetical protein.
  
     0.712
GFO_1881
Smr domain protein-possibly involved in DNA repair.
  
     0.688
GFO_1842
Hypothetical protein.
  
     0.687
GFO_1491
Hypothetical protein.
  
     0.685
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.