STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_1925AraC family transcriptional regulator protein. (337 aa)    
Predicted Functional Partners:
GFO_1926
Conserved hypothetical protein.
       0.773
GFO_1927
MgtC/SapB family transporter.
  
    0.633
GFO_0172
AraC family transcriptional regulator protein.
  
     0.592
GFO_1924
Conserved hypothetical protein.
       0.511
GFO_2938
AraC family transcriptional regulator protein.
  
     0.500
GFO_1923
Membrane protein.
       0.417
GFO_1922
Hypothetical protein.
       0.408
GFO_1928
MarR family transcriptional regulator protein.
  
    0.400
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.