Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
capDCapsular polysaccharide biosynthesis protein. (656 aa)    
Predicted Functional Partners:
GFO_1988
Exopolysaccharide production related sugar transferase.
  
 0.972
GFO_1986
ArnB-like DegT/DnrJ/EryC1/StrS family aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
  
 0.946
GFO_1983
Tyrosine-protein kinase Ptk.
 
  
 0.945
GFO_1984
Polysaccharide export protein.
 
  
 0.882
GFO_1987
Transferase.
 
     0.837
GFO_0550
SpsC-like DegT/DnrJ/EryC1/StrS family aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
  
 0.782
capM
Capsular polysaccharide biosynthesis glycosyl transferase.
 
  
 0.764
GFO_2027
SpsC-like DegT/DnrJ/EryC1/StrS family aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
  
 0.745
GFO_0540
Ptk-like tyrosine-protein kinase.
 
  
 0.744
GFO_0274
DegT-like DegT/DnrJ/EryC1/StrS family aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
  
 0.670
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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