STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
capHCapsular polysaccharide biosynthesis glycosyl transferase. (375 aa)    
Predicted Functional Partners:
GFO_2003
Glycosyl transferase, group 1.
    
0.844
GFO_2006
Polysaccharide deacetylase.
 
    0.747
GFO_0581
Glycosyl transferase, group 1.
  
     0.695
GFO_2005
Hypothetical protein.
       0.693
GFO_2002
Glycosyl transferase, group 1.
 
    
0.648
GFO_0585
Sugar transferase.
 
  
 0.613
GFO_0584
Glycosyl transferases group 1.
  
     0.596
GFO_0575
Glycosyl transferase, group 1.
  
     0.567
GFO_1988
Exopolysaccharide production related sugar transferase.
 
  
 0.538
GFO_2041
VipB-like polysaccharide biosynthesis protein.
  
    0.483
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.