Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GFO_2015Conserved hypothetical protein. (394 aa)    
Predicted Functional Partners:
NeuB
N-acetylneuraminate synthase.
       0.782
GFO_2017
Conserved hypothetical protein.
       0.620
fmt-2
methionyl-tRNA formyltransferase.
       0.620
GFO_2019
GNAT family acetyltransferase.
       0.620
GFO_2020
MaoC-like domain protein.
       0.592
neuA-2
N-acylneuraminate cytidylyltransferase.
       0.574
GFO_2028
Polysaccharide biosynthesis protein.
       0.566
GFO_2021
GNAT family acetyltransferase-possibly polyamine acetyltransferase.
       0.553
GFO_2022
Conserved hypothetical protein.
       0.553
GFO_2024
Short-chain dehydrogenase/reductase family protein.
       0.553
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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