STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_2027SpsC-like DegT/DnrJ/EryC1/StrS family aminotransferase; Belongs to the DegT/DnrJ/EryC1 family. (398 aa)    
Predicted Functional Partners:
GFO_2028
Polysaccharide biosynthesis protein.
 
 0.990
GFO_2022
Conserved hypothetical protein.
 
  
 0.955
GFO_2021
GNAT family acetyltransferase-possibly polyamine acetyltransferase.
 
 
 0.945
GFO_2019
GNAT family acetyltransferase.
 
  
 0.908
NeuB
N-acetylneuraminate synthase.
 
  
 0.887
GFO_2026
Aldo/keto reductase family protein.
 
    0.874
GFO_2025
Oxidoreductase.
  
  
 0.835
neuA-2
N-acylneuraminate cytidylyltransferase.
  
  
 0.820
GFO_2024
Short-chain dehydrogenase/reductase family protein.
  
    0.788
GFO_0585
Sugar transferase.
  
  
 0.764
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.