Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GFO_2073 | GFO_2074 | GFO_2073 | GFO_2074 | Protein containing nucleic acid-binding OB-fold domain; Belongs to the CvfB family. | Conserved hypothetical protein. | 0.569 |
GFO_2073 | menD | GFO_2073 | GFO_2075 | Protein containing nucleic acid-binding OB-fold domain; Belongs to the CvfB family. | Menaquinone biosynthesis protein MenD; Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2- succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). | 0.473 |
GFO_2074 | GFO_2073 | GFO_2074 | GFO_2073 | Conserved hypothetical protein. | Protein containing nucleic acid-binding OB-fold domain; Belongs to the CvfB family. | 0.569 |
GFO_2074 | menD | GFO_2074 | GFO_2075 | Conserved hypothetical protein. | Menaquinone biosynthesis protein MenD; Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2- succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). | 0.622 |
GFO_2076 | GFO_2077 | GFO_2076 | GFO_2077 | Isochorismate synthase. | Thioesterase superfamily protein. | 0.893 |
GFO_2076 | menA | GFO_2076 | GFO_2313 | Isochorismate synthase. | 1,4-dihydroxy-2-naphthoateoctaprenyltransferase; Conversion of 1,4-dihydroxy-2-naphthoate (DHNA) to demethylmenaquinone (DMK); Belongs to the MenA family. Type 1 subfamily. | 0.720 |
GFO_2076 | menB | GFO_2076 | GFO_2070 | Isochorismate synthase. | Naphthoate synthase; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA); Belongs to the enoyl-CoA hydratase/isomerase family. MenB subfamily. | 0.773 |
GFO_2076 | menC | GFO_2076 | GFO_2310 | Isochorismate synthase. | O-succinylbenzoate synthase. | 0.778 |
GFO_2076 | menD | GFO_2076 | GFO_2075 | Isochorismate synthase. | Menaquinone biosynthesis protein MenD; Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2- succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). | 0.991 |
GFO_2076 | menE | GFO_2076 | GFO_2306 | Isochorismate synthase. | O-succinylbenzoyl-CoA synthetase. | 0.802 |
GFO_2077 | GFO_2076 | GFO_2077 | GFO_2076 | Thioesterase superfamily protein. | Isochorismate synthase. | 0.893 |
GFO_2077 | menA | GFO_2077 | GFO_2313 | Thioesterase superfamily protein. | 1,4-dihydroxy-2-naphthoateoctaprenyltransferase; Conversion of 1,4-dihydroxy-2-naphthoate (DHNA) to demethylmenaquinone (DMK); Belongs to the MenA family. Type 1 subfamily. | 0.960 |
GFO_2077 | menB | GFO_2077 | GFO_2070 | Thioesterase superfamily protein. | Naphthoate synthase; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA); Belongs to the enoyl-CoA hydratase/isomerase family. MenB subfamily. | 0.969 |
GFO_2077 | menC | GFO_2077 | GFO_2310 | Thioesterase superfamily protein. | O-succinylbenzoate synthase. | 0.417 |
GFO_2077 | menD | GFO_2077 | GFO_2075 | Thioesterase superfamily protein. | Menaquinone biosynthesis protein MenD; Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2- succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). | 0.843 |
GFO_2077 | menE | GFO_2077 | GFO_2306 | Thioesterase superfamily protein. | O-succinylbenzoyl-CoA synthetase. | 0.660 |
GFO_3215 | menD | GFO_3215 | GFO_2075 | 3-hydroxybutyryl-CoA dehydratase; Belongs to the enoyl-CoA hydratase/isomerase family. | Menaquinone biosynthesis protein MenD; Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2- succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). | 0.433 |
GFO_3215 | menE | GFO_3215 | GFO_2306 | 3-hydroxybutyryl-CoA dehydratase; Belongs to the enoyl-CoA hydratase/isomerase family. | O-succinylbenzoyl-CoA synthetase. | 0.611 |
menA | GFO_2076 | GFO_2313 | GFO_2076 | 1,4-dihydroxy-2-naphthoateoctaprenyltransferase; Conversion of 1,4-dihydroxy-2-naphthoate (DHNA) to demethylmenaquinone (DMK); Belongs to the MenA family. Type 1 subfamily. | Isochorismate synthase. | 0.720 |
menA | GFO_2077 | GFO_2313 | GFO_2077 | 1,4-dihydroxy-2-naphthoateoctaprenyltransferase; Conversion of 1,4-dihydroxy-2-naphthoate (DHNA) to demethylmenaquinone (DMK); Belongs to the MenA family. Type 1 subfamily. | Thioesterase superfamily protein. | 0.960 |
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