STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_2133Alpha amylase; Belongs to the glycosyl hydrolase 13 family. (619 aa)    
Predicted Functional Partners:
GFO_2132
Alpha amylase.
   
0.976
GFO_2136
Major facilitator superfamily permease-possibly alpha-glucoside transporter.
 
  
 0.869
GFO_2139
SusD/RagB family protein.
 
  
 0.869
GFO_2138
TonB-dependent outer membrane receptor.
 
   
 0.858
pgmB
Beta-phosphoglucomutase.
 
  
 0.839
GFO_1170
Amino acid permease.
   
 0.834
GFO_1208
Amino acid permease.
   
 0.834
GFO_2134
Glycoside hydrolase, family 65.
 
  
 0.825
GFO_2203
Conserved hypothetical protein, secreted.
     0.775
GFO_0034
SusD/RagB family protein.
 
    0.771
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.