STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_2139SusD/RagB family protein. (533 aa)    
Predicted Functional Partners:
GFO_2138
TonB-dependent outer membrane receptor.
   
 0.955
GFO_2140
Conserved hypothetical protein.
 
  
 0.928
GFO_2133
Alpha amylase; Belongs to the glycosyl hydrolase 13 family.
 
  
 0.869
GFO_0035
TonB-dependent outer membrane receptor.
   
 0.787
GFO_2132
Alpha amylase.
 
  
 0.725
GFO_2136
Major facilitator superfamily permease-possibly alpha-glucoside transporter.
 
    0.708
susB
Alpha-glucosidase.
 
    0.667
GFO_0033
Secreted protein.
 
  
 0.613
GFO_2137
LacI family transcriptional regulator protein.
 
     0.606
GFO_2129
Conserved hypothetical protein.
 
   
 0.599
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.