STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_2304Secreted peptidase, family M24. (443 aa)    
Predicted Functional Partners:
menE
O-succinylbenzoyl-CoA synthetase.
       0.655
GFO_2305
Conserved hypothetical protein.
  
    0.648
GFO_1801
Conserved hypothetical protein, secreted.
  
  
 0.631
leuB
3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate.
 
  
 
 0.525
GFO_2324
Conserved hypothetical protein, secreted.
  
     0.495
GFO_3218
Conserved hypothetical protein, secreted.
  
     0.490
GFO_2307
Conserved hypothetical protein, membrane or secreted.
       0.479
GFO_2308
Conserved hypothetical protein.
       0.479
gatA
glutamyl-tRNA(Gln) amidotransferase subunit A.
  
 
 
 0.444
GFO_1281
Conserved hypothetical protein.
  
     0.437
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.