STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_2330Secreted aminopeptidase. (715 aa)    
Predicted Functional Partners:
pepD
Aminoacyl-histidine dipeptidase.
     
 0.906
ggt
Gamma-glutamyltranspeptidase.
   
 
 0.905
gshB
Glutathione synthetase; Belongs to the prokaryotic GSH synthase family.
     
  0.900
glyA
Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.
    
 0.833
aatA
Aspartate aminotransferase.
   
 
  0.802
aspB
Aspartate aminotransferase.
   
 
  0.802
GFO_0761
Cys/Met metabolism pyridoxal-phosphate-dependent enzyme.
   
 
  0.801
metC
Cys/Met metabolism pyridoxal-phosphate-dependent enzyme.
   
 
  0.801
GFO_2328
Patatin-like phospholipase.
       0.785
GFO_2329
Patatin-like phospholipase.
       0.785
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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