STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_2392MthK-like calcium-gated potassium channel. (336 aa)    
Predicted Functional Partners:
GFO_2393
Hypothetical protein.
       0.822
GFO_2394
Conserved hypothetical protein.
       0.797
GFO_0139
Conserved hypothetical protein.
 
     0.639
GFO_2395
GDSL-like lipase/acylhydrolase.
       0.627
trkH
Trk system potassium uptake protein.
  
 
 0.625
ntpJ
V-type sodium ATP synthase subunit J.
  
 
 0.625
moaE
Molybdopterin converting factor subunit 2.
   
    0.543
GFO_2390
Conserved hypothetical protein, membrane or secreted.
       0.528
GFO_2391
Sodium:alanine symporter family protein.
       0.506
GFO_2396
Sodium:alanine symporter family protein.
       0.404
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.