Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| GFO_2404 | rplM | GFO_2404 | GFO_0136 | Protein containing RNA-binding S4 domain. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.840 |
| GFO_2404 | rplN | GFO_2404 | GFO_2829 | Protein containing RNA-binding S4 domain. | 50S ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | 0.841 |
| GFO_2404 | rplQ | GFO_2404 | GFO_2813 | Protein containing RNA-binding S4 domain. | 50S ribosomal protein L17. | 0.859 |
| GFO_2404 | rplS | GFO_2404 | GFO_0619 | Protein containing RNA-binding S4 domain. | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.885 |
| GFO_2404 | rplT | GFO_2404 | GFO_0602 | Protein containing RNA-binding S4 domain. | 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.840 |
| GFO_2404 | rplV | GFO_2404 | GFO_2834 | Protein containing RNA-binding S4 domain. | 50S ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). | 0.839 |
| GFO_2404 | rpmB | GFO_2404 | GFO_2244 | Protein containing RNA-binding S4 domain. | 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | 0.851 |
| GFO_2404 | rpmG | GFO_2404 | GFO_2243 | Protein containing RNA-binding S4 domain. | 50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family. | 0.836 |
| GFO_2404 | rpmH | GFO_2404 | GFO_1073 | Protein containing RNA-binding S4 domain. | 50S ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family. | 0.844 |
| GFO_2404 | rpmI | GFO_2404 | GFO_0603 | Protein containing RNA-binding S4 domain. | 50S rbosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. | 0.836 |
| rplM | GFO_2404 | GFO_0136 | GFO_2404 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Protein containing RNA-binding S4 domain. | 0.840 |
| rplM | rplN | GFO_0136 | GFO_2829 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 50S ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | 0.997 |
| rplM | rplQ | GFO_0136 | GFO_2813 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 50S ribosomal protein L17. | 0.994 |
| rplM | rplS | GFO_0136 | GFO_0619 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.992 |
| rplM | rplT | GFO_0136 | GFO_0602 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.997 |
| rplM | rplV | GFO_0136 | GFO_2834 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 50S ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). | 0.996 |
| rplM | rpmB | GFO_0136 | GFO_2244 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | 0.991 |
| rplM | rpmG | GFO_0136 | GFO_2243 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family. | 0.990 |
| rplM | rpmH | GFO_0136 | GFO_1073 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 50S ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family. | 0.986 |
| rplM | rpmI | GFO_0136 | GFO_0603 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 50S rbosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. | 0.990 |
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