STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
crtIPhytoene dehydrogenase. (488 aa)    
Predicted Functional Partners:
crtB
Phytoene synthase.
  
 0.999
crtY
Lycopene cyclase.
 
 
 0.987
crtZ
Gamma-carotene hydroxylase.
 
   
 0.973
merR
MerR family transcriptional regulator protein.
 
     0.879
phr
Deoxyribodipyrimidine photo-lyase; Belongs to the DNA photolyase family.
 
  
 0.652
GFO_2803
Conserved hypothetical protein.
 
   
 0.462
idi
Isopentenyl-diphosphate delta-isomerase.
 
  
 0.453
rpsG
30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.
      
 0.438
GFO_1975
Magnesium chelatase subunit Chll.
  
  
 0.429
cry
Cryptochrome-like DNA photolyase family protein.
 
  
 0.424
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.