STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_2515Conserved hypothetical protein, secreted. (404 aa)    
Predicted Functional Partners:
GFO_2514
Conserved hypothetical protein, secreted.
 
   
 0.943
GFO_2512
TonB-dependent outer membrane receptor.
 
    0.912
GFO_2513
Vitamin K-dependent gamma-carboxylase.
 
     0.905
GFO_3605
Conserved hypothetical protein, membrane or secreted.
  
   0.545
GFO_3604
TonB-dependent outer membrane receptor.
  
 
   0.532
GFO_0462
Conserved hypothetical protein, secreted-possibly porin.
  
   
 0.435
GFO_0989
Conserved hypothetical protein, secreted.
  
 
   0.430
GFO_1157
Secreted alginate lyase-like protein.
  
   0.425
GFO_1156
Secreted alginate lyase-like protein.
  
   0.419
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.