STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GFO_2585Membrane protein. (401 aa)    
Predicted Functional Partners:
fusA
Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.
    
 
 0.859
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
   
 0.849
GFO_0786
cyclophilin/FKBP-type peptidyl-prolyl cis-trans isomerase.
    
 
 0.801
GFO_2538
cyclophilin/FKBP-type peptidyl-prolyl cis-trans isomerase.
    
 
 0.801
GFO_2586
Hypothetical protein.
       0.757
GFO_2584
Hypothetical protein.
       0.718
GFO_0617
DEAD box helicase family protein.
   
 0.685
GFO_1099
DeaD-like DEAD box family ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.
   
 0.685
GFO_2157
RhlE-like DEAD box family ATP-dependent RNA helicase.
   
 0.685
dbpA
ATP-independent RNA helicase DbpA.
   
 0.685
Your Current Organism:
Gramella forsetii
NCBI taxonomy Id: 411154
Other names: Cytophaga sp. KT0803, G. forsetii KT0803, Gramella forsetii KT0803, Gramella forsetii str. KT0803, Gramella forsetii strain KT0803
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.